species:   Rhsol
pid:       PID0559
parent:    Rhi-milR-152
paralog:   
locus:     KB317727.1:132052-132150
matures:   ['UGUGGCUUGGAGCUGGCAAGGA', 'CUUGUUCUGCAGCUCUAAGCUCUACA']
srr:       SRR1994874
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994874.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994874.cram KB317727.1:132052-132150

6 out of bounds
69 alignments
31 proper strand
30 stranded perfect matches

    *********************************                            *************************         
UAGACCAUCAUCUUGUUCUGCAGCUCUAAGCUCUACAGUAUUGACUAUUUUAGUGACAAAUGUACAGUGUGGCUUGGAGCUGGCAAGGAGUCACAGCAC
..(((.....((((((....((((((((((((.(((.(((((.((((...)))).).....)))).))).)))))))))))))))))).))).......
-------------------------------------------------------------------UGUGGCUUGGAGCUGGCAAGGA---------- l=22 a=1 c
-----------CUUGUUCUGCAGCUCUAAGCUCUACA-------------------------------------------------------------- l=26 a=0 c*
-------------------------------------------------------------------UGUGGCUUGGAGCUGGCAAGGAG--------- l=23 a=16 ma
------AUCAUCUUGUUCUGCAGCUCUAAGCUCUACA-------------------------------------------------------------- l=31 a=0 ma*

UAGACCAUCAUCUUGUUCUGCAG---------------------------------------------------------------------------- l=23 a=1 
--------CAUCUUGUUCUGCAGCUCUAAGC-------------------------------------------------------------------- l=23 a=1 
-------------------------------------------------UUAGUGACAAAUGUACAGUGUGGC-------------------------- l=24 a=1 
------------------------------------------------------------UGUACAGUGUGGCUUGGAGCUGGC--------------- l=24 a=1 
-------------------------------------------------------------GUACAGUGUGGCUUGGAGCUGGCAAG------------ l=26 a=2 
--------------------------------------------------------------UACAGUGUGGCUUGGAGCUGG---------------- l=21 a=1 
-------------------------------------------------------------------UGUGGCUUGGAGCUGGCAAGGA---------- l=22 a=1 (c)
-------------------------------------------------------------------UGUGGCUUGGAGCUGGCAAGGAG--------- l=23 a=16 (ma)
-------------------------------------------------------------------UGUGGCUUGGAGCUGGCAAaGAG--------- l=23 a=1 
-------------------------------------------------------------------UGUGGCUUGGAGCUGGCAAGGAGU-------- l=24 a=1 
---------------------------------------------------------------------UGGCUUGGAGCUGGCAAGG----------- l=19 a=1 
---------------------------------------------------------------------UGGCUUGGAGCUGGCAAGGA---------- l=20 a=1 
---------------------------------------------------------------------UGGCUUGGAGCUGGCAAGGAG--------- l=21 a=1 
---------------------------------------------------------------------UGGCUUGGAGCUGGCAAGGAGU-------- l=22 a=1 
---------------------------------------------------------------------UGGCUUGGAGCUGGCAAGGAGUC------- l=23 a=1 

mb-00111
ax-1001011
ku-01
ss-111110001000
fn-101
